Visual Dynamics
Run GROMACS-powered simulations, analyze trajectories, and visualize molecular structures — all from a modern web interface. No terminal required.
Everything you need
From structure upload to publication-ready analysis, all in one platform.
3D Visualization
Explore molecular structures and trajectories in 3D via NGL Viewer.
Analysis Tools
Perform RMSD, RMSF, radius of gyration and more directly in your browser.
Collaboration
Share sessions and analysis results with your research team.
Web-Based
No installation. Access Visual Dynamics from any modern browser.
Open Source
Built on open standards. Hosted and maintained by Fiocruz.
For Everyone
Designed for seasoned researchers and students learning MD alike.
Our publications
Peer-reviewed articles we've published about the Visual Dynamics platform and its capabilities.
Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
VisualDynamics automates biological simulations in Gromacs through a graphical web interface, making molecular dynamics accessible to researchers without computational expertise. Supports apoprotein and protein–ligand simulations.
DOI: 10.1186/s12859-023-05234-yNew Features in Visual Dynamics 3.0
A step-by-step protocol for protein–ligand complex simulation using ACPYPE-prepared ligands, demonstrating the platform's continuous evolution for validation, teaching, and demonstration purposes.
DOI: 10.3791/66964Trusted by leading institutions
Developed and supported by research institutions committed to advancing open science in Brazil.
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UFCSPAStart simulating today
No terminal. No setup. Upload your structures and run molecular dynamics simulations directly in your browser.